Package: wildlifeDI 1.0.1

wildlifeDI: Calculate Indices of Dynamic Interaction for Wildlife Tracking Data

Dynamic interaction refers to spatial-temporal associations in the movements of two (or more) animals. This package provides tools for calculating a suite of indices used for quantifying dynamic interaction with wildlife telemetry data. For more information on each of the methods employed see the references within. The package (as of version >= 0.3) also has new tools for automating contact analysis in large tracking datasets. The package (as of version 1.0) uses the 'move2' class of objects for working with tracking dataset.

Authors:Jed Long [aut, cre, cph]

wildlifeDI_1.0.1.tar.gz
wildlifeDI_1.0.1.zip(r-4.7)wildlifeDI_1.0.1.zip(r-4.6)wildlifeDI_1.0.1.zip(r-4.5)
wildlifeDI_1.0.1.tgz(r-4.6-any)wildlifeDI_1.0.1.tgz(r-4.5-any)
wildlifeDI_1.0.1.tar.gz(r-4.7-any)wildlifeDI_1.0.1.tar.gz(r-4.6-any)
wildlifeDI_1.0.1.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
wildlifeDI/json (API)

# Install 'wildlifeDI' in R:
install.packages('wildlifeDI', repos = c('https://jedalong.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/jedalong/wildlifedi/issues

Datasets:
  • deer - GPS tracking data of two male deer
  • does - GPS tracking data of female white-tailed deer

On CRAN:

Conda:

6.11 score 18 stars 36 scripts 621 downloads 2 mentions 19 exports 46 dependencies

Last updated from:f9a1abde21. Checks:9 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-devel-x86_64OK202
source / vignettesOK298
linux-release-x86_64OK209
macos-release-arm64OK136
macos-oldrel-arm64OK186
windows-develOK119
windows-releaseOK119
windows-oldrelOK126
wasm-releaseOK144

Exports:CacheckTOconDisplacementconPhaseconProcessconTimelagCrCsdcPlotDIDonGetSimultaneousGetTOHAIIABLixnltraj_move2move2_ltrajProx

Dependencies:ade4adehabitatLTadehabitatMAassertthatbitbit64classclassIntclicpp11crayonDBIdplyre1071genericsgluehmsKernSmoothlatticelifecyclelwgeommagrittrMASSmove2pillarpixmappkgconfigprettyunitsprogressproxyR6RcppRcppArmadillorlangs2sfsptibbletidyselecttzdbunitsutf8vctrsvroomwithrwk

wildlifeDI: Contact Analysis Workflow
Background | Set Up | Libraries and Packages | Contact Analysis - Doe Deer Data | Processing contacts | Mapping Contacts | Derive the Contact Network | Comparing contacts to non-contact fixes | Summary | Session Information
Rendered fromwildlifeDI-vignette-contact_analysis.Rmdusingknitr::rmarkdown

Last update: 2024-03-22
Started: 2021-01-27

wildlifeDI: Analysis of Dynamic Interaction Patterns in Wildlife Tracking Data
Introduction | Some Terminology | Data | Checking for temporal overlap | Static interaction analysis | Obtaining Simultaneous Fixes - T$_{\alpha\beta}$ | Measuring Dynamic Interaction | Global Analysis | Prox - Proximity analysis | Ca - Coefficient of association | Don - Doncaster's non-parametric test of interaction | Lixn - Test for spatial and temporal interaction | Cs - Coefficient of sociality | HAI - Half-weight association index | IAB - Interaction Statistic | Cr - Correlation coefficient | DI - Dynamic interaction index | Local Analysis | Proximity Analysis | IAB index | Dynamic Interaction index | Summary | References
Rendered fromwildlifeDI-vignette.rmdusingknitr::rmarkdown

Last update: 2024-02-10
Started: 2019-04-12